PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_06809
Common NameKK1_007001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NF-YB
Protein Properties Length: 142aa    MW: 16162 Da    PI: 6.7777
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_06809genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB160.23.2e-50499297
          NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                   +eqdr lPianv+rimk++lP  akisk+ k+++qecv+efisfvtseasdkc++e+rkt+ngdd++wal++lGf++y+e++  yl+kyr++e+ek
  C.cajan_06809  4 EEQDRALPIANVGRIMKQILPPSAKISKEGKQLMQECVTEFISFVTSEASDKCHKENRKTVNGDDICWALSSLGFDNYAEAIGRYLHKYRQAEREK 99
                   69*******************************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.2E-503127IPR009072Histone-fold
SuperFamilySSF471131.14E-376123IPR009072Histone-fold
PfamPF008081.0E-25973IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.6E-193755No hitNo description
PROSITE patternPS0068504056IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.6E-195674No hitNo description
PRINTSPR006152.6E-197593No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MDQEEQDRAL PIANVGRIMK QILPPSAKIS KEGKQLMQEC VTEFISFVTS EASDKCHKEN  60
RKTVNGDDIC WALSSLGFDN YAEAIGRYLH KYRQAEREKI NQHKLQPNTT KLQNYDESAS  120
KTDNQSRVTD KVENPLTTNQ SG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-43594392Transcription factor HapC (Eurofung)
4g92_B6e-43594392Transcription factor HapC (Eurofung)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00133DAPTransfer from AT1G09030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359141e-141AC235914.2 Glycine max clone GM_WBc0225O17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144936.11e-75hypothetical protein PHAVU_007G195900g
SwissprotO040271e-55NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A151U4V51e-105A0A151U4V5_CAJCA; Nuclear transcription factor Y subunit B-4
STRINGGLYMA20G37870.24e-71(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.17e-57nuclear factor Y, subunit B4